Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs2888316 chr3:80514312 G/C 9.09E-5 172 19.87 24.03 25.67 KM Plot
PCPG rs2897437 chr13:48417974 T/C 5.94E-5 177 2.93 25.17 25.53 KM Plot
PCPG rs2920022 chr12:69040055 G/A 7.55E-8 176 14.4 27.82 23.53 KM Plot
PCPG rs2930173 chr3:53507195 G/T 0.000243 172 31.43 24.5 25.53 KM Plot
PCPG rs2942806 chr13:37654938 A/G 0.000287 178 4.17 24.23 25.92 KM Plot
PCPG rs2942807 chr13:37654931 T/G 0.000287 178 4.17 24.23 25.92 KM Plot
PCPG rs2951825 chr8:6726614 T/G 6.48E-10 176 27.3 18.7 8.2 KM Plot
PCPG rs2951855 chr8:6732698 T/C 7.25E-6 177 13.27 18.7 27.33 KM Plot
PCPG rs2953168 chr2:241539003 A/G 3.44E-5 178 25.92 20.2 10.3 KM Plot
PCPG rs2953171 chr2:241536053 C/T 5.33E-5 172 25.97 21.82 10.3 KM Plot
PCPG rs2974707 chr5:141187233 G/A 0 178 15.08 32.02 24.52 KM Plot
PCPG rs2975757 chr2:241530616 A/T 3.44E-5 178 25.92 20.2 10.3 KM Plot
PCPG rs2975759 chr2:241530793 A/G 7.15E-12 178 25.77 24.62 6.73 KM Plot
PCPG rs2975761 chr2:241531584 G/A 7.15E-12 178 25.77 24.62 6.73 KM Plot
PCPG rs2977772 chr8:6733196 G/A 8.59E-6 175 13.27 19 27.3 KM Plot